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Has the topic of death ever been brought up in the anime before? Yes it has.
Allusions to Death
- Hitokage was in danger of dying in its debut episode. Daisuke left it to die because "it was a useless Pokemon".
- When the St. Anne sank, Satoshi-tachi and Rocket Gang were presumed dead.
- In "Do Coil Dream of Electric Mice!?", the Pokemon at the Gunjon City Pokemon Center were explicitly stated to have been in danger of dying if the power wasn't brought back.
- Mi's Entei nearly killed Lizardon. The subject matter of the film in general was interesting, emotional, and less childish than people give Pokemon credit for.
- Sakaki commands his Rocket Gang minions to "Kill them all!" in the Mewtwo episodes.
- Celebi nearly dies in the fourth movie, but gets revived. Before the revival, we even see Satoshi himself breaking down at the thought of his friend having been killed.
Actual Death
- "The Ghost Pokémon and the Summer Festival" featured the ghost of a dead woman.
- Ai, a character from the original Mewtwo saga, died in a car crash.
- Aitwo, Fushigidanetwo, Hitokagetwo, and Zenigametwo (plus other clones) die in the first movie prologue and the CD Drama.
- Dr. Fuji and his team of scientists are also killed by Mewtwo.
- Latios dies in the 5th movie because Lions and Zanner were a couple of...ugh.
- Lucario dies in the 8th movie.
Of course, for some reason, people totally ignore these events.
A clone of a little girl who died in a car crash, dying before she could even set foot into the outside world is pretty sad. It's even sadder in the CD Drama where she describes her feelings about never getting to eat the foods she wanted from birth because she was inside that test tube. We also see Mewtwo being visibly traumatized by her death. It's heartbreaking and didn't need to be graphic. Her father and his team of scientists also incurred the wrath of the newly-awakened adult Mewtwo and were killed on-screen. It wasn't a graphic death, but it's still pretty clear to the children that they died. It wasn't something that was glossed over either, because even the music being played in the background was eerie. I'd say the circumstances of Ai's death was more detailed and meaningful than if they had her skewered with knives or something. The execution is what counts the most, otherwise the death is pointlessly graphic and adds nothing to plot.
With Latios, he could have continued having a happy life with his sister if it weren't for the villains being greedy/power-hunger jerks and stealing the city's Soul Dew. The protagonists saved a city from total monstrosities - at a price. Lucario's death was also a pretty big highlight of the eighth movie, though that was more of a bittersweet "he'll be reunited with his master" death than a depressing one.
They died on-screen. It's as detailed as it can get in Pokemon. Pokemon doesn't need anything gruesome either way. The subject matter is what matters, and I think Pokemon did it in more mature manner than most "gruesome" deaths shown in more young adult television. Of course, I highly doubt the anime would delve into these topics ever again the way it's headed.