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I would have expected to see some sort of discussion about the ancient text in the ruins somewhere in the English-speaking community, but apparently that sort of thing isn't very interesting. In the Japanese community, on the other hand, the text was deciphered no more than a week after the games' release. I've known about this for some time, myself.
As is typical of Game Freak, the secrets of the ruins are written down in ancient script (this time in cuneiform) found on walls. Some fans at 2ch decoded the characters, and it turned out that almost all of characters are meant to be substituted with the alphabet letters, which is to say that the messages are essentially written in English (unlike the Unown text in Johto and Sinnoh, which was written in romaji in the Japanese versions; similarly, the braille in Hoenn and the Sevii Islands was code for hiragana characters).
This page has the decoded text (in English) as well as the Japanese translation. The text is as follows:
The last paragraphs are a mystery. ③, ④, ⑤ and ⑥ denote characters that aren't interchangeable with alphabet letters, possibly representing three or four Pokémon. In fact, the order of ③ and ④ is reversed between Black and White, suggesting that they either pertain to Reshiram and Zekrom (as the wiki suggests) or to Tornelos and Voltolos. Now, the king is said to have defeated Reshiram/Zekrom and befriended its counterpart, whereas the legend told in the main story asserts that the two Dragons were split from the same Pokémon (by the twin heroes that had founded Isshu together with that Pokémon). Unless Game Freak wanted to compound the Dragons' origin story, the story told in the ruins would seem to be in reference to the Genie trio. But then, what would that mean? That Landlos is actually a human in disguise, and this is what makes it different from its counterparts? The trio lack any sort of established backstory that would either support or rule out this possibility.
If we do interpret the text as referencing Reshiram and Zekrom, then the problem lies in that the king is said to have defeated Reshiram/Zekrom and befriended its counterpart, whereas the legend told in the main story asserts that the two Dragons were split from the same Pokémon (by the twin heroes that had founded Isshu together with that Pokémon). Considering that the items in the ruins date back 3000 years, that would almost certainly mean that Reshiram and Zekrom started out as a pair only to be merged at some point, and then they were split again by the twin heroes. This renders the theory somewhat cumbersome, but it still has its merits.
On the one hand, the mythology in the main story is fairly straightforward as it can be understood as a reference to the founding fathers of the US (and also to the civil war, seeing as Isshu was also destroyed in a war at one point by the sons of the twin heroes). On the other hand, we have these underwater ruins, whose story is told through an odd script which few players will bother to decode. It is possible that Game Freak created this ambiguity in preparation for the third version, since Black and White's plot as-is doesn't leave much room for Kyurem. Perhaps Kyurem had nothing to do with the founding of Isshu, but it used to be the king of the civilization that had lived there before. Perhaps some event made the king turn into a Pokémon, as well as causing Reshiram and Zekrom to co-exist as one being. This would mean that ③ is Reshiram/Zekrom and ④ is the other one, with ⑤ being their combined entity and ⑥ being a humanoid Kyurem.
In the third version, Kyurem might wish to battle N due to the latter taking the former's position. It is possible that the king sacrificed himself so that Reshiram and Zekrom could be as one, and so it would pain Kyurem to see the two split again. The only problem I could see is this: Would Kyurem be able to revert its form to that of the original king? We don't actually know that the king was ever an ordinary person, but even if that were the case, I could still see Kyurem having a more majestic form which it would gain by holding the Ancient Crown (the last item found in the ruins) in the third version. Granted, the item is already accessible in Black and White and has no such effect, but the NPC who buys the item implies that there is more to the crown than meets the eye.
In summary, it seems that much like the Solaceon Ruins foreshadowed HGSS and the Sinjoh Ruins event ("All lives touch other lives to create something anew and alive."), the Underwater Ruins hint at Black and White's third version. The finer details are tentative (the Japanese wiki proposes different theories from mine), but this gives us more to discuss than Rayquaza and Giratina ever did.
As is typical of Game Freak, the secrets of the ruins are written down in ancient script (this time in cuneiform) found on walls. Some fans at 2ch decoded the characters, and it turned out that almost all of characters are meant to be substituted with the alphabet letters, which is to say that the messages are essentially written in English (unlike the Unown text in Johto and Sinnoh, which was written in romaji in the Japanese versions; similarly, the braille in Hoenn and the Sevii Islands was code for hiragana characters).
This page has the decoded text (in English) as well as the Japanese translation. The text is as follows:
The first two paragraphs seem rather extraneous and full of so-called words of wisdom, not unlike some of the braille text in Generation III. I think that Game Freak were just being pompous by referencing prime numbers, of which 2, 3, 5 and 7 are examples.
The last paragraphs are a mystery. ③, ④, ⑤ and ⑥ denote characters that aren't interchangeable with alphabet letters, possibly representing three or four Pokémon. In fact, the order of ③ and ④ is reversed between Black and White, suggesting that they either pertain to Reshiram and Zekrom (as the wiki suggests) or to Tornelos and Voltolos. Now, the king is said to have defeated Reshiram/Zekrom and befriended its counterpart, whereas the legend told in the main story asserts that the two Dragons were split from the same Pokémon (by the twin heroes that had founded Isshu together with that Pokémon). Unless Game Freak wanted to compound the Dragons' origin story, the story told in the ruins would seem to be in reference to the Genie trio. But then, what would that mean? That Landlos is actually a human in disguise, and this is what makes it different from its counterparts? The trio lack any sort of established backstory that would either support or rule out this possibility.
If we do interpret the text as referencing Reshiram and Zekrom, then the problem lies in that the king is said to have defeated Reshiram/Zekrom and befriended its counterpart, whereas the legend told in the main story asserts that the two Dragons were split from the same Pokémon (by the twin heroes that had founded Isshu together with that Pokémon). Considering that the items in the ruins date back 3000 years, that would almost certainly mean that Reshiram and Zekrom started out as a pair only to be merged at some point, and then they were split again by the twin heroes. This renders the theory somewhat cumbersome, but it still has its merits.
On the one hand, the mythology in the main story is fairly straightforward as it can be understood as a reference to the founding fathers of the US (and also to the civil war, seeing as Isshu was also destroyed in a war at one point by the sons of the twin heroes). On the other hand, we have these underwater ruins, whose story is told through an odd script which few players will bother to decode. It is possible that Game Freak created this ambiguity in preparation for the third version, since Black and White's plot as-is doesn't leave much room for Kyurem. Perhaps Kyurem had nothing to do with the founding of Isshu, but it used to be the king of the civilization that had lived there before. Perhaps some event made the king turn into a Pokémon, as well as causing Reshiram and Zekrom to co-exist as one being. This would mean that ③ is Reshiram/Zekrom and ④ is the other one, with ⑤ being their combined entity and ⑥ being a humanoid Kyurem.
In the third version, Kyurem might wish to battle N due to the latter taking the former's position. It is possible that the king sacrificed himself so that Reshiram and Zekrom could be as one, and so it would pain Kyurem to see the two split again. The only problem I could see is this: Would Kyurem be able to revert its form to that of the original king? We don't actually know that the king was ever an ordinary person, but even if that were the case, I could still see Kyurem having a more majestic form which it would gain by holding the Ancient Crown (the last item found in the ruins) in the third version. Granted, the item is already accessible in Black and White and has no such effect, but the NPC who buys the item implies that there is more to the crown than meets the eye.
In summary, it seems that much like the Solaceon Ruins foreshadowed HGSS and the Sinjoh Ruins event ("All lives touch other lives to create something anew and alive."), the Underwater Ruins hint at Black and White's third version. The finer details are tentative (the Japanese wiki proposes different theories from mine), but this gives us more to discuss than Rayquaza and Giratina ever did.
